J5_6D90_005

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCGCUCGACUU*AUGCCGACGGGCG*CGUG*CCG*CGACCC

Length

39 nucleotides

Bulged bases

6D90|1|2|C|127, 6D90|1|2|C|142, 6D90|1|2|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|G|122
6D90|1|2|G|123
6D90|1|2|U|124
6D90|1|2|C|125
6D90|1|2|G|126
6D90|1|2|C|127
6D90|1|2|U|128
6D90|1|2|C|129
6D90|1|2|G|130
6D90|1|2|A|141
6D90|1|2|C|142
6D90|1|2|U|143
6D90|1|2|U|144
*
6D90|1|2|A|175
6D90|1|2|U|176
6D90|1|2|G|177
6D90|1|2|C|178
6D90|1|2|C|179
6D90|1|2|G|180
6D90|1|2|A|181
6D90|1|2|C|182
6D90|1|2|G|183
6D90|1|2|G|184
6D90|1|2|G|185
6D90|1|2|C|186
6D90|1|2|G|187
*
6D90|1|2|C|212
6D90|1|2|G|213
6D90|1|2|U|214
6D90|1|2|G|215
*
6D90|1|2|C|310
6D90|1|2|C|311
6D90|1|2|G|312
*
6D90|1|2|C|337
6D90|1|2|G|338
6D90|1|2|A|339
6D90|1|2|C|340
6D90|1|2|C|341
6D90|1|2|C|342

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain HH

eS6

Chain JJ

eS8