J5_6D90_007
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGCUA*UAGUG*CUUAC*GUC
- Length
- 22 nucleotides
- Bulged bases
- 6D90|1|3|U|8, 6D90|1|3|G|9, 6D90|1|3|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|3|G|7
6D90|1|3|U|8
6D90|1|3|G|9
6D90|1|3|G|10
*
6D90|1|3|C|26
6D90|1|3|G|27
6D90|1|3|C|28
6D90|1|3|U|29
6D90|1|3|A|30
*
6D90|1|3|U|42
6D90|1|3|A|43
6D90|1|3|G|44
6D90|1|3|U|45
6D90|1|3|G|46
*
6D90|1|3|C|57
6D90|1|3|U|58
6D90|1|3|U|59
6D90|1|3|A|60
6D90|1|3|C|61
*
6D90|1|3|G|75
6D90|1|3|U|76
6D90|1|3|C|77
Current chains
- Chain 3
- P-tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- uL16
- Chain jj
- eRF1
Coloring options: