J5_6D90_009
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAGCGCC*GGCGUACG*CCGGAGUCG*CAAAGCG*UAAG
- Length
- 36 nucleotides
- Bulged bases
- 6D90|1|5|C|159, 6D90|1|5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|5|C|111
6D90|1|5|C|112
6D90|1|5|A|113
6D90|1|5|G|114
6D90|1|5|C|115
6D90|1|5|G|116
6D90|1|5|C|117
6D90|1|5|C|118
*
6D90|1|5|G|153
6D90|1|5|G|154
6D90|1|5|C|155
6D90|1|5|G|156
6D90|1|5|U|157
6D90|1|5|A|158
6D90|1|5|C|159
6D90|1|5|G|160
*
6D90|1|5|C|275
6D90|1|5|C|276
6D90|1|5|G|277
6D90|1|5|G|278
6D90|1|5|A|279
6D90|1|5|G|280
6D90|1|5|U|281
6D90|1|5|C|282
6D90|1|5|G|283
*
6D90|1|5|C|304
6D90|1|5|A|305
6D90|1|5|A|306
6D90|1|5|A|307
6D90|1|5|G|308
6D90|1|5|C|309
6D90|1|5|G|310
*
6D90|1|5|U|327
6D90|1|5|A|328
6D90|1|5|A|329
6D90|1|5|G|330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain G
- eL8
- Chain L
- eL13
- Chain N
- eL15
- Chain h
- eL35
- Chain i
- eL36
Coloring options: