J5_6D90_011
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUC*GGUCAGUCGGUC*GGAGU*AAUCCGGAGUGG*CGCCGGGCCGUAC
- Length
- 47 nucleotides
- Bulged bases
- 6D90|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D90|1|5|G|2406
6D90|1|5|G|2407
6D90|1|5|U|2408
6D90|1|5|U|2409
6D90|1|5|C|2410
*
6D90|1|5|G|2434
6D90|1|5|G|2435
6D90|1|5|U|2436
6D90|1|5|C|2437
6D90|1|5|A|2438
6D90|1|5|G|2439
6D90|1|5|U|2440
6D90|1|5|C|2441
6D90|1|5|G|2442
6D90|1|5|G|2443
6D90|1|5|U|2444
6D90|1|5|C|2445
*
6D90|1|5|G|2515
6D90|1|5|G|2516
6D90|1|5|A|2517
6D90|1|5|G|2518
6D90|1|5|U|2519
*
6D90|1|5|A|2536
6D90|1|5|A|2537
6D90|1|5|U|2538
6D90|1|5|C|2539
6D90|1|5|C|2540
6D90|1|5|G|2541
6D90|1|5|G|2542
6D90|1|5|A|2543
6D90|1|5|G|2544
6D90|1|5|U|2545
6D90|1|5|G|2546
6D90|1|5|G|2547
*
6D90|1|5|C|2772
6D90|1|5|G|2773
6D90|1|5|C|2774
6D90|1|5|C|2775
6D90|1|5|G|2776
6D90|1|5|G|2777
6D90|1|5|G|2778
6D90|1|5|C|2779
6D90|1|5|C|2780
6D90|1|5|G|2781
6D90|1|5|U|2782
6D90|1|5|A|2783
6D90|1|5|C|2784
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- eL19
- Chain X
- eL23
- Chain g
- eL34
- Chain h
- eL35
- Chain j
- eL37
- Chain k
- eL38
- Chain l
- eL39
Coloring options: