J5_6D90_015

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

6D90|1|2|G|588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|C|30
6D90|1|2|U|31
6D90|1|2|U|32
6D90|1|2|G|33
6D90|1|2|U|34
*
6D90|1|2|A|521
6D90|1|2|A|522
6D90|1|2|A|523
6D90|1|2|U|524
6D90|1|2|A|525
6D90|1|2|A|526
6D90|1|2|C|527
*
6D90|1|2|G|558
6D90|1|2|G|559
6D90|1|2|A|560
6D90|1|2|A|561
6D90|1|2|U|562
6D90|1|2|G|563
6D90|1|2|A|564
6D90|1|2|G|565
*
6D90|1|2|C|585
6D90|1|2|G|586
6D90|1|2|A|587
6D90|1|2|G|588
6D90|1|2|G|589
6D90|1|2|A|590
6D90|1|2|U|591
6D90|1|2|C|592
6D90|1|2|C|593
6D90|1|2|A|594
6D90|1|2|U|595
*
6D90|1|2|A|641
6D90|1|2|U|642
6D90|1|2|A|643
6D90|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain YY

uS12

Chain ff

eS30