J5_6D90_016

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG

Length

27 nucleotides

Bulged bases

6D90|1|2|U|55, 6D90|1|2|C|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|2|C|53
6D90|1|2|A|54
6D90|1|2|U|55
6D90|1|2|G|56
*
6D90|1|2|C|89
6D90|1|2|G|90
6D90|1|2|A|91
6D90|1|2|A|92
6D90|1|2|U|93
6D90|1|2|G|94
6D90|1|2|G|95
6D90|1|2|C|96
*
6D90|1|2|G|434
6D90|1|2|A|435
6D90|1|2|G|436
*
6D90|1|2|C|457
6D90|1|2|A|458
6D90|1|2|C|459
6D90|1|2|A|460
6D90|1|2|U|461
*
6D90|1|2|A|468
6D90|1|2|A|469
6D90|1|2|G|470
6D90|1|2|G|471
6D90|1|2|C|472
6D90|1|2|A|473
6D90|1|2|G|474

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain HH

eS6

Chain JJ

eS8

Chain KK

uS4

Chain V

uL14

Chain ZZ

eS24