J5_6D90_018
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGC*GUG*CUUA*UC
- Length
- 16 nucleotides
- Bulged bases
- 6D90|1|3|U|8, 6D90|1|3|G|9, 6D90|1|3|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6D90_018 not in the Motif Atlas
- Homologous match to J5_3ZGZ_001
- Geometric discrepancy: 0.5712
- The information below is about J5_3ZGZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_21852.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6D90|1|3|G|7
6D90|1|3|U|8
6D90|1|3|G|9
6D90|1|3|G|10
*
6D90|1|3|C|26
6D90|1|3|G|27
6D90|1|3|C|28
*
6D90|1|3|G|44
6D90|1|3|U|45
6D90|1|3|G|46
*
6D90|1|3|C|57
6D90|1|3|U|58
6D90|1|3|U|59
6D90|1|3|A|60
*
6D90|1|3|U|76
6D90|1|3|C|77
Current chains
- Chain 3
- P-tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- uL16
- Chain jj
- eRF1
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