J5_6D90_022
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6D90|1|5|G|3922, 6D90|1|5|A|4376, 6D90|1|5|G|4377, 6D90|1|5|A|4378, 6D90|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6D90_022 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3006
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6D90|1|5|U|3920
6D90|1|5|U|3921
6D90|1|5|G|3922
6D90|1|5|A|3923
*
6D90|1|5|U|4188
6D90|1|5|U|4189
6D90|1|5|U|4190
6D90|1|5|G|4191
*
6D90|1|5|C|4204
6D90|1|5|A|4205
*
6D90|1|5|U|4227
6D90|1|5|G|4228
*
6D90|1|5|C|4375
6D90|1|5|A|4376
6D90|1|5|G|4377
6D90|1|5|A|4378
6D90|1|5|A|4379
6D90|1|5|A|4380
6D90|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 4
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain A
- uL2
- Chain N
- eL15
- Chain Q
- rL18
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
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