J5_6D9J_001

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAUU*AAUAG

Length

28 nucleotides

Bulged bases

6D9J|1|2|U|32, 6D9J|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|C|30
6D9J|1|2|U|31
6D9J|1|2|U|32
6D9J|1|2|G|33
6D9J|1|2|U|34
*
6D9J|1|2|A|521
6D9J|1|2|A|522
6D9J|1|2|A|523
6D9J|1|2|U|524
6D9J|1|2|A|525
6D9J|1|2|A|526
6D9J|1|2|C|527
*
6D9J|1|2|G|558
6D9J|1|2|G|559
6D9J|1|2|A|560
6D9J|1|2|A|561
6D9J|1|2|U|562
6D9J|1|2|G|563
*
6D9J|1|2|C|592
6D9J|1|2|C|593
6D9J|1|2|A|594
6D9J|1|2|U|595
6D9J|1|2|U|596
*
6D9J|1|2|A|640
6D9J|1|2|A|641
6D9J|1|2|U|642
6D9J|1|2|A|643
6D9J|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain YY

uS12

Chain ZZ

eS24

Chain ff

eS30