J5_6D9J_004

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGCUCGACUU*AUGCCGACGGG*UGCAUU*ACCUCGGGCCG*CGACC

Length

45 nucleotides

Bulged bases

6D9J|1|2|C|127, 6D9J|1|2|C|142, 6D9J|1|2|U|305, 6D9J|1|2|G|307

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|G|123
6D9J|1|2|U|124
6D9J|1|2|C|125
6D9J|1|2|G|126
6D9J|1|2|C|127
6D9J|1|2|U|128
6D9J|1|2|C|129
6D9J|1|2|G|130
6D9J|1|2|A|141
6D9J|1|2|C|142
6D9J|1|2|U|143
6D9J|1|2|U|144
*
6D9J|1|2|A|175
6D9J|1|2|U|176
6D9J|1|2|G|177
6D9J|1|2|C|178
6D9J|1|2|C|179
6D9J|1|2|G|180
6D9J|1|2|A|181
6D9J|1|2|C|182
6D9J|1|2|G|183
6D9J|1|2|G|184
6D9J|1|2|G|185
*
6D9J|1|2|U|214
6D9J|1|2|G|215
6D9J|1|2|C|216
6D9J|1|2|A|217
6D9J|1|2|U|218
6D9J|1|2|U|219
*
6D9J|1|2|A|302
6D9J|1|2|C|303
6D9J|1|2|C|304
6D9J|1|2|U|305
6D9J|1|2|C|306
6D9J|1|2|G|307
6D9J|1|2|G|308
6D9J|1|2|G|309
6D9J|1|2|C|310
6D9J|1|2|C|311
6D9J|1|2|G|312
*
6D9J|1|2|C|337
6D9J|1|2|G|338
6D9J|1|2|A|339
6D9J|1|2|C|340
6D9J|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain HH

eS6

Chain JJ

eS8