J5_6D9J_006

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUCUUG*CUG*CGUUU*AAUGGAAUAGG*CAUGAU

Length

31 nucleotides

Bulged bases

6D9J|1|2|C|687, 6D9J|1|2|U|871, 6D9J|1|2|G|873, 6D9J|1|2|A|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D9J|1|2|A|685
6D9J|1|2|U|686
6D9J|1|2|C|687
6D9J|1|2|U|688
6D9J|1|2|U|689
6D9J|1|2|G|690
*
6D9J|1|2|C|736
6D9J|1|2|U|743
6D9J|1|2|G|744
*
6D9J|1|2|C|797
6D9J|1|2|G|798
6D9J|1|2|U|799
6D9J|1|2|U|800
6D9J|1|2|U|801
*
6D9J|1|2|A|864
6D9J|1|2|A|865
6D9J|1|2|U|866
6D9J|1|2|G|867
6D9J|1|2|G|868
6D9J|1|2|A|869
6D9J|1|2|A|870
6D9J|1|2|U|871
6D9J|1|2|A|872
6D9J|1|2|G|873
6D9J|1|2|G|874
*
6D9J|1|2|C|912
6D9J|1|2|A|913
6D9J|1|2|U|914
6D9J|1|2|G|915
6D9J|1|2|A|916
6D9J|1|2|U|917

Current chains

Chain 2

18S rRNA

Nearby chains

Chain FF

eS4

Chain II

eS7

Chain MM

uS17

Chain OO

uS15

Chain R

eL19

Chain XX

uS8

Chain YY

uS12