3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAGUC*GGACC*GGUUC*GCC*GCAGAUC
Length
26 nucleotides
Bulged bases
6D9J|1|5|G|1517, 6D9J|1|5|C|2289, 6D9J|1|5|U|2350
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6D9J|1|5|G|1335
6D9J|1|5|G|1336
6D9J|1|5|A|1337
6D9J|1|5|G|1338
6D9J|1|5|U|1339
6D9J|1|5|C|1340
*
6D9J|1|5|G|1516
6D9J|1|5|G|1517
6D9J|1|5|A|1518
6D9J|1|5|C|1519
6D9J|1|5|C|1520
*
6D9J|1|5|G|1657
6D9J|1|5|G|1658
6D9J|1|5|U|1659
6D9J|1|5|U|1660
6D9J|1|5|C|1661
*
6D9J|1|5|G|2288
6D9J|1|5|C|2289
6D9J|1|5|C|2290
*
6D9J|1|5|G|2345
6D9J|1|5|C|2346
6D9J|1|5|A|2347
6D9J|1|5|G|2348
6D9J|1|5|A|2349
6D9J|1|5|U|2350
6D9J|1|5|C|2351

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
uL4
Chain L
eL13
Chain N
eL15
Chain a
uL15
Chain e
eL32
Chain r
eL28

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2518 s