J5_6D9J_009
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUC*GGACC*GGUUC*GCC*GCAGAUC
- Length
- 26 nucleotides
- Bulged bases
- 6D9J|1|5|G|1517, 6D9J|1|5|C|2289, 6D9J|1|5|U|2350
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|G|1335
6D9J|1|5|G|1336
6D9J|1|5|A|1337
6D9J|1|5|G|1338
6D9J|1|5|U|1339
6D9J|1|5|C|1340
*
6D9J|1|5|G|1516
6D9J|1|5|G|1517
6D9J|1|5|A|1518
6D9J|1|5|C|1519
6D9J|1|5|C|1520
*
6D9J|1|5|G|1657
6D9J|1|5|G|1658
6D9J|1|5|U|1659
6D9J|1|5|U|1660
6D9J|1|5|C|1661
*
6D9J|1|5|G|2288
6D9J|1|5|C|2289
6D9J|1|5|C|2290
*
6D9J|1|5|G|2345
6D9J|1|5|C|2346
6D9J|1|5|A|2347
6D9J|1|5|G|2348
6D9J|1|5|A|2349
6D9J|1|5|U|2350
6D9J|1|5|C|2351
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- eL28
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