J5_6D9J_015
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGA*UUUG*CAC*GUG*CAGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6D9J|1|5|G|3922, 6D9J|1|5|A|4376, 6D9J|1|5|G|4377, 6D9J|1|5|A|4378, 6D9J|1|5|A|4379, 6D9J|1|5|A|4380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6D9J|1|5|U|3920
6D9J|1|5|U|3921
6D9J|1|5|G|3922
6D9J|1|5|A|3923
*
6D9J|1|5|U|4188
6D9J|1|5|U|4189
6D9J|1|5|U|4190
6D9J|1|5|G|4191
*
6D9J|1|5|C|4204
6D9J|1|5|A|4205
6D9J|1|5|C|4206
*
6D9J|1|5|G|4226
6D9J|1|5|U|4227
6D9J|1|5|G|4228
*
6D9J|1|5|C|4375
6D9J|1|5|A|4376
6D9J|1|5|G|4377
6D9J|1|5|A|4378
6D9J|1|5|A|4379
6D9J|1|5|A|4380
6D9J|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain N
- eL15
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
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