J5_6DDD_005
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6DDD|1|1|G|1785, 6DDD|1|1|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6DDD_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0918
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6DDD|1|1|G|1718
6DDD|1|1|C|1719
6DDD|1|1|A|1720
6DDD|1|1|A|1721
6DDD|1|1|A|1722
6DDD|1|1|A|1723
6DDD|1|1|U|1724
6DDD|1|1|G|1725
6DDD|1|1|A|1726
*
6DDD|1|1|U|1750
6DDD|1|1|G|1751
*
6DDD|1|1|C|1778
6DDD|1|1|C|1779
*
6DDD|1|1|G|1783
6DDD|1|1|U|1784
6DDD|1|1|G|1785
6DDD|1|1|A|1786
6DDD|1|1|A|1787
6DDD|1|1|U|1788
6DDD|1|1|A|1789
6DDD|1|1|G|1790
6DDD|1|1|G|1791
*
6DDD|1|1|C|2015
6DDD|1|1|A|2016
6DDD|1|1|C|2017
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain A
- 50S ribosomal protein L19
- Chain L
- 50S ribosomal protein L3
- Chain W
- 50S ribosomal protein L14
Coloring options: