J5_6DNC_001

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

6DNC|1|A|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DNC|1|A|C|36
6DNC|1|A|U|37
6DNC|1|A|G|38
6DNC|1|A|G|39
*
6DNC|1|A|C|403
6DNC|1|A|G|404
6DNC|1|A|U|405
6DNC|1|A|G|406
*
6DNC|1|A|C|436
6DNC|1|A|U|437
6DNC|1|A|U|438
6DNC|1|A|U|439
6DNC|1|A|C|440
*
6DNC|1|A|G|497
6DNC|1|A|A|498
6DNC|1|A|A|499
6DNC|1|A|G|500
*
6DNC|1|A|C|545
6DNC|1|A|A|546
6DNC|1|A|A|547
6DNC|1|A|G|548

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain QA

30S ribosomal protein S4

Chain YA

30S ribosomal protein S12