J5_6DNC_004
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 6DNC|1|B|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6DNC_004 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0941
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6DNC|1|B|C|47
6DNC|1|B|G|48
6DNC|1|B|A|49
6DNC|1|B|U|50
6DNC|1|B|G|51
6DNC|1|B|A|52
6DNC|1|B|A|53
6DNC|1|B|G|54
*
6DNC|1|B|C|116
6DNC|1|B|G|117
6DNC|1|B|A|118
6DNC|1|B|A|119
6DNC|1|B|U|120
6DNC|1|B|G|121
*
6DNC|1|B|C|130
6DNC|1|B|A|131
*
6DNC|1|B|U|148
6DNC|1|B|A|149
6DNC|1|B|U|150
*
6DNC|1|B|A|176
6DNC|1|B|G|177
6DNC|1|B|G|178
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain HA
- 50S ribosomal protein L34
Coloring options: