J5_6DNC_008
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 6DNC|1|B|A|2062, 6DNC|1|B|A|2448, 6DNC|1|B|U|2449, 6DNC|1|B|U|2506, 6DNC|1|B|U|2585, 6DNC|1|B|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DNC|1|B|G|2057
6DNC|1|B|A|2058
6DNC|1|B|A|2059
6DNC|1|B|A|2060
6DNC|1|B|G|2061
6DNC|1|B|A|2062
6DNC|1|B|C|2063
6DNC|1|B|C|2064
*
6DNC|1|B|G|2446
6DNC|1|B|G|2447
6DNC|1|B|A|2448
6DNC|1|B|U|2449
6DNC|1|B|A|2450
6DNC|1|B|A|2451
6DNC|1|B|C|2452
6DNC|1|B|A|2453
*
6DNC|1|B|U|2500
6DNC|1|B|C|2501
6DNC|1|B|G|2502
6DNC|1|B|A|2503
6DNC|1|B|U|2504
6DNC|1|B|G|2505
6DNC|1|B|U|2506
6DNC|1|B|C|2507
*
6DNC|1|B|G|2582
6DNC|1|B|G|2583
6DNC|1|B|U|2584
6DNC|1|B|U|2585
6DNC|1|B|U|2586
6DNC|1|B|A|2587
6DNC|1|B|G|2588
*
6DNC|1|B|C|2606
6DNC|1|B|G|2607
6DNC|1|B|G|2608
6DNC|1|B|U|2609
6DNC|1|B|C|2610
6DNC|1|B|C|2611
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
- Chain FA
- 50S ribosomal protein L32
- Chain G
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L4
- Chain LA
- Transfer RNA; tRNA
- Chain MA
- Peptide chain release factor 1
- Chain P
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L22
Coloring options: