J5_6DTI_001

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUGG*CUUGGAGGAAGAAGCC*GGUGUAAACUCCUGAAC*GGUAAUAG*CGAG

Length

49 nucleotides

Bulged bases

6DTI|1|A|A|404, 6DTI|1|A|G|405, 6DTI|1|A|A|408, 6DTI|1|A|G|409, 6DTI|1|A|A|410, 6DTI|1|A|A|411, 6DTI|1|A|G|412, 6DTI|1|A|U|425, 6DTI|1|A|A|427, 6DTI|1|A|A|428, 6DTI|1|A|C|429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DTI|1|A|C|36
6DTI|1|A|U|37
6DTI|1|A|G|38
6DTI|1|A|G|39
*
6DTI|1|A|C|399
6DTI|1|A|U|400
6DTI|1|A|U|401
6DTI|1|A|G|402
6DTI|1|A|G|403
6DTI|1|A|A|404
6DTI|1|A|G|405
6DTI|1|A|G|406
6DTI|1|A|A|407
6DTI|1|A|A|408
6DTI|1|A|G|409
6DTI|1|A|A|410
6DTI|1|A|A|411
6DTI|1|A|G|412
6DTI|1|A|C|413
6DTI|1|A|C|414
*
6DTI|1|A|G|421
6DTI|1|A|G|422
6DTI|1|A|U|423
6DTI|1|A|G|424
6DTI|1|A|U|425
6DTI|1|A|A|426
6DTI|1|A|A|427
6DTI|1|A|A|428
6DTI|1|A|C|429
6DTI|1|A|U|430
6DTI|1|A|C|431
6DTI|1|A|C|432
6DTI|1|A|U|433
6DTI|1|A|G|434
6DTI|1|A|A|435
6DTI|1|A|A|436
6DTI|1|A|C|437
*
6DTI|1|A|G|477
6DTI|1|A|G|478
6DTI|1|A|U|479
6DTI|1|A|A|480
6DTI|1|A|A|481
6DTI|1|A|U|482
6DTI|1|A|A|483
6DTI|1|A|G|484
*
6DTI|1|A|C|529
6DTI|1|A|G|530
6DTI|1|A|A|531
6DTI|1|A|G|532

Current chains

Chain A

16s rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12