Loop J5_6DTI

3D structure

PDB id: 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.54 Å

Loop

Sequence: CUGG*CUUGGAGGAAGAAGCC*GGUGUAAACUCCUGAAC*GGUAAUAG*CGAG
Length: 49 nucleotides
Bulged bases: 6DTI|1|A|A|404, 6DTI|1|A|G|405, 6DTI|1|A|A|408, 6DTI|1|A|G|409, 6DTI|1|A|A|410, 6DTI|1|A|A|411, 6DTI|1|A|G|412, 6DTI|1|A|U|425, 6DTI|1|A|A|427, 6DTI|1|A|A|428, 6DTI|1|A|C|429
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6DTI|1|A|C|36
6DTI|1|A|U|37
6DTI|1|A|G|38
6DTI|1|A|G|39
*
6DTI|1|A|C|399
6DTI|1|A|U|400
6DTI|1|A|U|401
6DTI|1|A|G|402
6DTI|1|A|G|403
6DTI|1|A|A|404
6DTI|1|A|G|405
6DTI|1|A|G|406
6DTI|1|A|A|407
6DTI|1|A|A|408
6DTI|1|A|G|409
6DTI|1|A|A|410
6DTI|1|A|A|411
6DTI|1|A|G|412
6DTI|1|A|C|413
6DTI|1|A|C|414
*
6DTI|1|A|G|421
6DTI|1|A|G|422
6DTI|1|A|U|423
6DTI|1|A|G|424
6DTI|1|A|U|425
6DTI|1|A|A|426
6DTI|1|A|A|427
6DTI|1|A|A|428
6DTI|1|A|C|429
6DTI|1|A|U|430
6DTI|1|A|C|431
6DTI|1|A|C|432
6DTI|1|A|U|433
6DTI|1|A|G|434
6DTI|1|A|A|435
6DTI|1|A|A|436
6DTI|1|A|C|437
*
6DTI|1|A|G|477
6DTI|1|A|G|478
6DTI|1|A|U|479
6DTI|1|A|A|480
6DTI|1|A|A|481
6DTI|1|A|U|482
6DTI|1|A|A|483
6DTI|1|A|G|484
*
6DTI|1|A|C|529
6DTI|1|A|G|530
6DTI|1|A|A|531
6DTI|1|A|G|532

Current chains

Chain A: 16s rRNA

Nearby chains

Chain D: 30S ribosomal protein S4
Chain L: 30S ribosomal protein S12

J5_6DTI_001