J5_6DZP_006

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

6DZP|1|A|A|1975, 6DZP|1|A|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6DZP_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1406

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6DZP|1|A|G|1892
6DZP|1|A|C|1893
6DZP|1|A|A|1894
6DZP|1|A|A|1895
6DZP|1|A|A|1896
6DZP|1|A|A|1897
6DZP|1|A|U|1898
6DZP|1|A|G|1899
6DZP|1|A|C|1900
*
6DZP|1|A|G|1924
6DZP|1|A|A|1925
*
6DZP|1|A|U|1968
6DZP|1|A|G|1969
*
6DZP|1|A|C|1973
6DZP|1|A|A|1974
6DZP|1|A|A|1975
6DZP|1|A|A|1976
6DZP|1|A|C|1977
6DZP|1|A|C|1978
6DZP|1|A|A|1979
6DZP|1|A|G|1980
6DZP|1|A|U|1981
*
6DZP|1|A|A|2212
6DZP|1|A|A|2213
6DZP|1|A|C|2214

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19