J5_6DZP_008
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6DZP|1|A|C|2299, 6DZP|1|A|G|2652, 6DZP|1|A|G|2653, 6DZP|1|A|A|2654, 6DZP|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6DZP_008 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.1329
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DZP|1|A|U|2297
6DZP|1|A|U|2298
6DZP|1|A|C|2299
6DZP|1|A|A|2300
*
6DZP|1|A|U|2467
6DZP|1|A|U|2468
6DZP|1|A|U|2469
6DZP|1|A|A|2470
*
6DZP|1|A|U|2482
6DZP|1|A|G|2483
*
6DZP|1|A|C|2505
6DZP|1|A|G|2506
*
6DZP|1|A|C|2651
6DZP|1|A|G|2652
6DZP|1|A|G|2653
6DZP|1|A|A|2654
6DZP|1|A|U|2655
6DZP|1|A|A|2656
6DZP|1|A|A|2657
6DZP|1|A|A|2658
6DZP|1|A|A|2659
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33 2
- Chain e
- 50S ribosomal protein L35
- Chain y
- 50S ribosomal protein L28
Coloring options: