Loop J5_6EK0

3D structure

PDB id: 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: High-resolution cryo-EM structure of the human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: AAGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*G(B8W)(UR3)(PSU)UAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 6EK0|1|L5|A|3908, 6EK0|1|L5|A|4394, 6EK0|1|L5|PSU|4450, 6EK0|1|L5|G|4451, 6EK0|1|L5|U|4452, 6EK0|1|L5|U|4555, 6EK0|1|L5|U|4556
QA status: Modified nucleotides: OMC, 5MC, PSU, B8W, UR3

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6EK0|1|L5|A|3902
6EK0|1|L5|A|3903
6EK0|1|L5|G|3904
6EK0|1|L5|A|3905
6EK0|1|L5|A|3906
6EK0|1|L5|G|3907
6EK0|1|L5|A|3908
6EK0|1|L5|OMC|3909
6EK0|1|L5|C|3910
*
6EK0|1|L5|G|4392
6EK0|1|L5|G|4393
6EK0|1|L5|A|4394
6EK0|1|L5|U|4395
6EK0|1|L5|A|4396
6EK0|1|L5|A|4397
6EK0|1|L5|C|4398
6EK0|1|L5|U|4399
6EK0|1|L5|G|4400
*
6EK0|1|L5|C|4444
6EK0|1|L5|U|4445
6EK0|1|L5|U|4446
6EK0|1|L5|5MC|4447
6EK0|1|L5|G|4448
6EK0|1|L5|A|4449
6EK0|1|L5|PSU|4450
6EK0|1|L5|G|4451
6EK0|1|L5|U|4452
6EK0|1|L5|C|4453
*
6EK0|1|L5|G|4528
6EK0|1|L5|B8W|4529
6EK0|1|L5|UR3|4530
6EK0|1|L5|PSU|4531
6EK0|1|L5|U|4532
6EK0|1|L5|A|4533
6EK0|1|L5|G|4534
*
6EK0|1|L5|U|4552
6EK0|1|L5|A|4553
6EK0|1|L5|G|4554
6EK0|1|L5|U|4555
6EK0|1|L5|U|4556
6EK0|1|L5|U|4557
6EK0|1|L5|U|4558

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain LI: 60S ribosomal protein L10-like
Chain Lb: 60S ribosomal protein L29

J5_6EK0_004