J5_6EML_002
3D structure
- PDB id
- 6EML (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 6EML|1|2|U|56, 6EML|1|2|A|93, 6EML|1|2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EML|1|2|C|54
6EML|1|2|A|55
6EML|1|2|U|56
6EML|1|2|G|57
*
6EML|1|2|C|90
6EML|1|2|G|91
6EML|1|2|A|92
6EML|1|2|A|93
6EML|1|2|U|94
6EML|1|2|G|95
6EML|1|2|G|96
6EML|1|2|C|97
*
6EML|1|2|G|386
6EML|1|2|A|387
6EML|1|2|G|388
*
6EML|1|2|C|409
6EML|1|2|A|410
6EML|1|2|C|411
6EML|1|2|A|412
6EML|1|2|U|413
*
6EML|1|2|A|420
6EML|1|2|A|421
6EML|1|2|G|422
6EML|1|2|G|423
6EML|1|2|C|424
6EML|1|2|A|425
6EML|1|2|G|426
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S4-A
- Chain T
- 40S ribosomal protein S6-A
- Chain V
- 40S ribosomal protein S8-A
- Chain W
- 40S ribosomal protein S9-A
- Chain d
- 40S ribosomal protein S24-A
- Chain t
- Ribosome biogenesis protein TSR1
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