J5_6EML_003

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6EML|1|2|U|128, 6EML|1|2|C|130, 6EML|1|2|C|131, 6EML|1|2|U|132, 6EML|1|2|U|133, 6EML|1|2|U|134, 6EML|1|2|A|135, 6EML|1|2|C|136, 6EML|1|2|A|140, 6EML|1|2|U|141, 6EML|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|A|124
6EML|1|2|U|125
6EML|1|2|A|126
6EML|1|2|G|127
6EML|1|2|U|128
6EML|1|2|U|129
6EML|1|2|C|130
6EML|1|2|C|131
6EML|1|2|U|132
6EML|1|2|U|133
6EML|1|2|U|134
6EML|1|2|A|135
6EML|1|2|C|136
6EML|1|2|U|137
6EML|1|2|A|138
6EML|1|2|C|139
6EML|1|2|A|140
6EML|1|2|U|141
6EML|1|2|G|142
6EML|1|2|G|143
*
6EML|1|2|C|172
6EML|1|2|A|173
6EML|1|2|U|174
6EML|1|2|G|175
6EML|1|2|C|176
6EML|1|2|U|177
6EML|1|2|U|178
6EML|1|2|A|179
6EML|1|2|A|180
6EML|1|2|A|181
6EML|1|2|A|182
*
6EML|1|2|U|203
6EML|1|2|G|204
*
6EML|1|2|C|263
6EML|1|2|G|264
6EML|1|2|A|265
*
6EML|1|2|U|289
6EML|1|2|G|290
6EML|1|2|G|291
6EML|1|2|U|292
6EML|1|2|U|293

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A