J5_6EML_005

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUG*UUUCCUUCUG*CAGGACUUUU*AAUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU

Length

58 nucleotides

Bulged bases

6EML|1|2|U|639, 6EML|1|2|U|694, 6EML|1|2|C|696, 6EML|1|2|C|697, 6EML|1|2|U|813, 6EML|1|2|G|815, 6EML|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|A|636
6EML|1|2|C|637
6EML|1|2|U|638
6EML|1|2|U|639
6EML|1|2|U|640
6EML|1|2|G|641
*
6EML|1|2|U|693
6EML|1|2|U|694
6EML|1|2|U|695
6EML|1|2|C|696
6EML|1|2|C|697
6EML|1|2|U|698
6EML|1|2|U|699
6EML|1|2|C|700
6EML|1|2|U|701
6EML|1|2|G|702
*
6EML|1|2|C|736
6EML|1|2|A|737
6EML|1|2|G|738
6EML|1|2|G|739
6EML|1|2|A|740
6EML|1|2|C|741
6EML|1|2|U|742
6EML|1|2|U|743
6EML|1|2|U|744
6EML|1|2|U|745
*
6EML|1|2|A|806
6EML|1|2|A|807
6EML|1|2|U|808
6EML|1|2|A|809
6EML|1|2|G|810
6EML|1|2|A|811
6EML|1|2|A|812
6EML|1|2|U|813
6EML|1|2|A|814
6EML|1|2|G|815
6EML|1|2|G|816
6EML|1|2|A|817
6EML|1|2|C|818
6EML|1|2|G|819
6EML|1|2|U|820
6EML|1|2|U|821
6EML|1|2|U|822
6EML|1|2|G|823
6EML|1|2|G|824
*
6EML|1|2|C|848
6EML|1|2|C|849
6EML|1|2|A|850
6EML|1|2|U|851
6EML|1|2|C|852
6EML|1|2|G|853
6EML|1|2|U|854
6EML|1|2|A|855
6EML|1|2|A|856
6EML|1|2|U|857
6EML|1|2|G|858
6EML|1|2|A|859
6EML|1|2|U|860

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A

Chain c

40S ribosomal protein S23-A