J5_6EML_005
3D structure
- PDB id
- 6EML (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACUUUG*UUUCCUUCUG*CAGGACUUUU*AAUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU
- Length
- 58 nucleotides
- Bulged bases
- 6EML|1|2|U|639, 6EML|1|2|U|694, 6EML|1|2|C|696, 6EML|1|2|C|697, 6EML|1|2|U|813, 6EML|1|2|G|815, 6EML|1|2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EML|1|2|A|636
6EML|1|2|C|637
6EML|1|2|U|638
6EML|1|2|U|639
6EML|1|2|U|640
6EML|1|2|G|641
*
6EML|1|2|U|693
6EML|1|2|U|694
6EML|1|2|U|695
6EML|1|2|C|696
6EML|1|2|C|697
6EML|1|2|U|698
6EML|1|2|U|699
6EML|1|2|C|700
6EML|1|2|U|701
6EML|1|2|G|702
*
6EML|1|2|C|736
6EML|1|2|A|737
6EML|1|2|G|738
6EML|1|2|G|739
6EML|1|2|A|740
6EML|1|2|C|741
6EML|1|2|U|742
6EML|1|2|U|743
6EML|1|2|U|744
6EML|1|2|U|745
*
6EML|1|2|A|806
6EML|1|2|A|807
6EML|1|2|U|808
6EML|1|2|A|809
6EML|1|2|G|810
6EML|1|2|A|811
6EML|1|2|A|812
6EML|1|2|U|813
6EML|1|2|A|814
6EML|1|2|G|815
6EML|1|2|G|816
6EML|1|2|A|817
6EML|1|2|C|818
6EML|1|2|G|819
6EML|1|2|U|820
6EML|1|2|U|821
6EML|1|2|U|822
6EML|1|2|G|823
6EML|1|2|G|824
*
6EML|1|2|C|848
6EML|1|2|C|849
6EML|1|2|A|850
6EML|1|2|U|851
6EML|1|2|C|852
6EML|1|2|G|853
6EML|1|2|U|854
6EML|1|2|A|855
6EML|1|2|A|856
6EML|1|2|U|857
6EML|1|2|G|858
6EML|1|2|A|859
6EML|1|2|U|860
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S4-A
- Chain U
- 40S ribosomal protein S7-A
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S23-A
Coloring options: