J5_6ENF_001

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6ENF|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6ENF_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1125

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ENF|1|A|C|47
6ENF|1|A|G|48
6ENF|1|A|A|49
6ENF|1|A|U|50
6ENF|1|A|G|51
6ENF|1|A|A|52
6ENF|1|A|A|53
6ENF|1|A|G|54
*
6ENF|1|A|C|116
6ENF|1|A|G|117
6ENF|1|A|A|118
6ENF|1|A|A|119
6ENF|1|A|U|120
6ENF|1|A|G|121
*
6ENF|1|A|C|130
6ENF|1|A|A|131
*
6ENF|1|A|U|148
6ENF|1|A|A|149
6ENF|1|A|U|150
*
6ENF|1|A|A|176
6ENF|1|A|G|177
6ENF|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34