J5_6ERI_001

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGGAAG*CGAAUA*UU*GAAC*GAG

Length

23 nucleotides

Bulged bases

6ERI|1|AA|G|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ERI|1|AA|C|46
6ERI|1|AA|G|47
6ERI|1|AA|A|48
6ERI|1|AA|G|49
6ERI|1|AA|G|50
6ERI|1|AA|A|51
6ERI|1|AA|A|52
6ERI|1|AA|G|53
*
6ERI|1|AA|C|114
6ERI|1|AA|G|115
6ERI|1|AA|A|116
6ERI|1|AA|A|117
6ERI|1|AA|U|118
6ERI|1|AA|A|119
*
6ERI|1|AA|U|128
6ERI|1|AA|U|129
*
6ERI|1|AA|G|132
6ERI|1|AA|A|133
6ERI|1|AA|A|134
6ERI|1|AA|C|135
*
6ERI|1|AA|G|161
6ERI|1|AA|A|162
6ERI|1|AA|G|163

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L23, chloroplastic

Chain AY

50S ribosomal protein L29, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic