J5_6ERI_004
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6ERI|1|AA|U|1276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ERI_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.12
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6ERI|1|AA|C|594
6ERI|1|AA|G|595
6ERI|1|AA|A|596
6ERI|1|AA|C|597
6ERI|1|AA|U|598
6ERI|1|AA|C|599
*
6ERI|1|AA|G|679
6ERI|1|AA|G|680
6ERI|1|AA|A|681
6ERI|1|AA|C|682
*
6ERI|1|AA|G|820
6ERI|1|AA|U|821
6ERI|1|AA|U|822
6ERI|1|AA|C|823
*
6ERI|1|AA|G|1216
6ERI|1|AA|C|1217
*
6ERI|1|AA|G|1271
6ERI|1|AA|A|1272
6ERI|1|AA|G|1273
6ERI|1|AA|A|1274
6ERI|1|AA|A|1275
6ERI|1|AA|U|1276
6ERI|1|AA|G|1277
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L4, chloroplastic
- Chain AL
- 50S ribosomal protein L15, chloroplastic
- Chain AQ
- 50S ribosomal protein L20, chloroplastic
- Chain AR
- 50S ribosomal protein L21, chloroplastic
- Chain Ad
- 50S ribosomal protein L35, chloroplastic
Coloring options: