J5_6ERI_009
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6ERI|1|BA|A|94, 6ERI|1|BA|C|324
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ERI_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0871
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ERI|1|BA|C|60
6ERI|1|BA|A|61
6ERI|1|BA|A|62
6ERI|1|BA|G|63
*
6ERI|1|BA|C|91
6ERI|1|BA|G|92
6ERI|1|BA|G|93
6ERI|1|BA|A|94
6ERI|1|BA|C|95
6ERI|1|BA|G|96
6ERI|1|BA|G|97
6ERI|1|BA|G|98
*
6ERI|1|BA|C|286
6ERI|1|BA|A|287
6ERI|1|BA|C|288
*
6ERI|1|BA|G|309
6ERI|1|BA|A|310
6ERI|1|BA|C|311
*
6ERI|1|BA|G|322
6ERI|1|BA|G|323
6ERI|1|BA|C|324
6ERI|1|BA|A|325
6ERI|1|BA|G|326
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AK
- 50S ribosomal protein L14, chloroplastic
- Chain BP
- 30S ribosomal protein S16, chloroplastic
- Chain BT
- 30S ribosomal protein S20, chloroplastic
Coloring options: