J5_6FAI_003
3D structure
- PDB id
- 6FAI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6FAI|1|2|A|93, 6FAI|1|2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FAI_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0783
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FAI|1|2|C|54
6FAI|1|2|A|55
6FAI|1|2|U|56
6FAI|1|2|G|57
*
6FAI|1|2|C|90
6FAI|1|2|G|91
6FAI|1|2|A|92
6FAI|1|2|A|93
6FAI|1|2|U|94
6FAI|1|2|G|95
6FAI|1|2|G|96
6FAI|1|2|C|97
*
6FAI|1|2|G|386
6FAI|1|2|A|387
6FAI|1|2|G|388
*
6FAI|1|2|C|409
6FAI|1|2|A|410
6FAI|1|2|C|411
*
6FAI|1|2|G|422
6FAI|1|2|G|423
6FAI|1|2|C|424
6FAI|1|2|A|425
6FAI|1|2|G|426
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain G
- 40S ribosomal protein S6-A
- Chain I
- 40S ribosomal protein S8-A
- Chain J
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S24-A
- Chain k
- Ribosome biogenesis protein TSR1
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