J5_6FEC_001
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CUUGU*AAAUAACAAUA*UAAUUGGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 44 nucleotides
- Bulged bases
- 6FEC|1|A|A|580, 6FEC|1|A|C|583
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FEC|1|A|C|30
6FEC|1|A|U|31
6FEC|1|A|U|32
6FEC|1|A|G|33
6FEC|1|A|U|34
*
6FEC|1|A|A|511
6FEC|1|A|A|512
6FEC|1|A|A|513
6FEC|1|A|U|514
6FEC|1|A|A|515
6FEC|1|A|A|516
6FEC|1|A|C|517
6FEC|1|A|A|518
6FEC|1|A|A|519
6FEC|1|A|U|520
6FEC|1|A|A|521
*
6FEC|1|A|U|543
6FEC|1|A|A|544
6FEC|1|A|A|545
6FEC|1|A|U|546
6FEC|1|A|U|547
6FEC|1|A|G|548
6FEC|1|A|G|549
6FEC|1|A|A|550
6FEC|1|A|A|551
6FEC|1|A|U|552
6FEC|1|A|G|553
6FEC|1|A|A|554
6FEC|1|A|G|555
*
6FEC|1|A|C|575
6FEC|1|A|G|576
6FEC|1|A|A|577
6FEC|1|A|G|578
6FEC|1|A|G|579
6FEC|1|A|A|580
6FEC|1|A|U|581
6FEC|1|A|C|582
6FEC|1|A|C|583
6FEC|1|A|A|584
6FEC|1|A|U|585
*
6FEC|1|A|A|631
6FEC|1|A|U|632
6FEC|1|A|A|633
6FEC|1|A|G|634
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S9
- Chain Q
- 40S ribosomal protein S23
- Chain V
- 40S ribosomal protein S30
- Chain w
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: