Loop J5_6FEC

3D structure

PDB id: 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human cap-dependent 48S pre-initiation complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å

Loop

Sequence: AUCUUG*CGCCCCUCGGCGC*GCCCGAAGCGUU*AUGGAAUAG*CAUGAU
Length: 46 nucleotides
Bulged bases: 6FEC|1|A|C|677, 6FEC|1|A|U|678, 6FEC|1|A|U|679, 6FEC|1|A|C|736, 6FEC|1|A|U|745, 6FEC|1|A|C|793, 6FEC|1|A|G|794, 6FEC|1|A|U|867, 6FEC|1|A|A|909
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6FEC|1|A|A|675
6FEC|1|A|U|676
6FEC|1|A|C|677
6FEC|1|A|U|678
6FEC|1|A|U|679
6FEC|1|A|G|683
*
6FEC|1|A|C|732
6FEC|1|A|G|733
6FEC|1|A|C|734
6FEC|1|A|C|735
6FEC|1|A|C|736
6FEC|1|A|C|744
6FEC|1|A|U|745
6FEC|1|A|C|746
6FEC|1|A|G|747
6FEC|1|A|G|748
6FEC|1|A|C|749
6FEC|1|A|G|750
6FEC|1|A|C|751
*
6FEC|1|A|G|785
6FEC|1|A|C|786
6FEC|1|A|C|787
6FEC|1|A|C|788
6FEC|1|A|G|789
6FEC|1|A|A|790
6FEC|1|A|A|791
6FEC|1|A|G|792
6FEC|1|A|C|793
6FEC|1|A|G|794
6FEC|1|A|U|795
6FEC|1|A|U|796
*
6FEC|1|A|A|861
6FEC|1|A|U|862
6FEC|1|A|G|863
6FEC|1|A|G|864
6FEC|1|A|A|865
6FEC|1|A|A|866
6FEC|1|A|U|867
6FEC|1|A|A|868
6FEC|1|A|G|869
*
6FEC|1|A|C|908
6FEC|1|A|A|909
6FEC|1|A|U|910
6FEC|1|A|G|911
6FEC|1|A|A|912
6FEC|1|A|U|913

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain G: 40S ribosomal protein S11
Chain X: 40S ribosomal protein S7
Chain Z: 40S ribosomal protein S13
Chain a: 40S ribosomal protein S15a
Chain q: 40S ribosomal protein S6

J5_6FEC_004