J5_6FEC_005
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6FEC|1|A|C|462
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FEC_005 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.2023
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FEC|1|A|C|53
6FEC|1|A|A|54
6FEC|1|A|U|55
6FEC|1|A|G|56
*
6FEC|1|A|C|89
6FEC|1|A|G|90
6FEC|1|A|A|91
6FEC|1|A|A|92
6FEC|1|A|U|93
6FEC|1|A|G|94
6FEC|1|A|G|95
6FEC|1|A|C|96
*
6FEC|1|A|G|424
6FEC|1|A|A|425
6FEC|1|A|G|426
*
6FEC|1|A|C|447
6FEC|1|A|A|448
6FEC|1|A|C|449
*
6FEC|1|A|G|460
6FEC|1|A|G|461
6FEC|1|A|C|462
6FEC|1|A|A|463
6FEC|1|A|G|464
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4, X isoform
- Chain o
- 40S ribosomal protein S8
- Chain q
- 40S ribosomal protein S6
- Chain s
- 40S ribosomal protein S24
Coloring options: