Loop J5_6FEC

3D structure

PDB id: 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
Description: Human cap-dependent 48S pre-initiation complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å

Loop

Sequence: GGUCGCUCGCUCCUCUCCUACUU*AUGCCGACGGCG*CGUG*CCG*CGACCC
Length: 48 nucleotides
Bulged bases: 6FEC|1|A|C|129, 6FEC|1|A|C|131, 6FEC|1|A|U|132, 6FEC|1|A|C|136, 6FEC|1|A|U|137, 6FEC|1|A|C|139, 6FEC|1|A|U|140, 6FEC|1|A|C|142
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6FEC|1|A|G|122
6FEC|1|A|G|123
6FEC|1|A|U|124
6FEC|1|A|C|125
6FEC|1|A|G|126
6FEC|1|A|C|127
6FEC|1|A|U|128
6FEC|1|A|C|129
6FEC|1|A|G|130
6FEC|1|A|C|131
6FEC|1|A|U|132
6FEC|1|A|C|133
6FEC|1|A|C|134
6FEC|1|A|U|135
6FEC|1|A|C|136
6FEC|1|A|U|137
6FEC|1|A|C|138
6FEC|1|A|C|139
6FEC|1|A|U|140
6FEC|1|A|A|141
6FEC|1|A|C|142
6FEC|1|A|U|143
6FEC|1|A|U|144
*
6FEC|1|A|A|175
6FEC|1|A|U|176
6FEC|1|A|G|177
6FEC|1|A|C|178
6FEC|1|A|C|179
6FEC|1|A|G|180
6FEC|1|A|A|181
6FEC|1|A|C|182
6FEC|1|A|G|183
6FEC|1|A|G|184
6FEC|1|A|C|185
6FEC|1|A|G|186
*
6FEC|1|A|C|209
6FEC|1|A|G|210
6FEC|1|A|U|211
6FEC|1|A|G|212
*
6FEC|1|A|C|301
6FEC|1|A|C|302
6FEC|1|A|G|303
*
6FEC|1|A|C|327
6FEC|1|A|G|328
6FEC|1|A|A|329
6FEC|1|A|C|330
6FEC|1|A|C|331
6FEC|1|A|C|332

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain I: 40S ribosomal protein S4, X isoform
Chain o: 40S ribosomal protein S8
Chain q: 40S ribosomal protein S6

J5_6FEC_006