3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCAAGCCGG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
6FRK|1|5|G|3620, 6FRK|1|5|G|3625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6FRK_004 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.143
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FRK|1|5|G|2855
6FRK|1|5|C|2856
6FRK|1|5|A|2857
6FRK|1|5|A|2858
6FRK|1|5|G|2859
6FRK|1|5|C|2860
6FRK|1|5|C|2861
6FRK|1|5|G|2862
6FRK|1|5|G|2863
*
6FRK|1|5|U|2887
6FRK|1|5|G|2888
*
6FRK|1|5|U|3613
6FRK|1|5|G|3614
*
6FRK|1|5|C|3618
6FRK|1|5|G|3619
6FRK|1|5|G|3620
6FRK|1|5|A|3621
6FRK|1|5|C|3622
6FRK|1|5|C|3623
6FRK|1|5|A|3624
6FRK|1|5|G|3625
6FRK|1|5|G|3626
*
6FRK|1|5|C|3835
6FRK|1|5|A|3836
6FRK|1|5|C|3837

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain R
Ribosomal protein eL19
Chain V
Ribosomal protein L23
Chain W
Ribosomal protein eL24

Coloring options:


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