J5_6FRK_005
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6FRK|1|5|A|3908, 6FRK|1|5|A|4394, 6FRK|1|5|U|4395, 6FRK|1|5|U|4450, 6FRK|1|5|G|4451, 6FRK|1|5|U|4452, 6FRK|1|5|U|4555, 6FRK|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FRK|1|5|A|3903
6FRK|1|5|G|3904
6FRK|1|5|A|3905
6FRK|1|5|A|3906
6FRK|1|5|G|3907
6FRK|1|5|A|3908
6FRK|1|5|C|3909
6FRK|1|5|C|3910
*
6FRK|1|5|G|4392
6FRK|1|5|G|4393
6FRK|1|5|A|4394
6FRK|1|5|U|4395
6FRK|1|5|A|4396
6FRK|1|5|A|4397
6FRK|1|5|C|4398
6FRK|1|5|U|4399
6FRK|1|5|G|4400
*
6FRK|1|5|C|4444
6FRK|1|5|U|4445
6FRK|1|5|U|4446
6FRK|1|5|C|4447
6FRK|1|5|G|4448
6FRK|1|5|A|4449
6FRK|1|5|U|4450
6FRK|1|5|G|4451
6FRK|1|5|U|4452
6FRK|1|5|C|4453
*
6FRK|1|5|G|4528
6FRK|1|5|G|4529
6FRK|1|5|U|4530
6FRK|1|5|U|4531
6FRK|1|5|U|4532
6FRK|1|5|A|4533
6FRK|1|5|G|4534
*
6FRK|1|5|U|4552
6FRK|1|5|A|4553
6FRK|1|5|G|4554
6FRK|1|5|U|4555
6FRK|1|5|U|4556
6FRK|1|5|U|4557
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
- Chain B
- Ribosomal protein uL3
- Chain C
- Ribosomal protein uL4
- Chain I
- Ribosomal protein uL16
- Chain P
- Ribosomal protein uL22
- Chain a
- Ribosomal protein uL15
- Chain b
- 60S ribosomal protein L29
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