3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
GCAAGCCGG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
6FTG|1|u|G|3620, 6FTG|1|u|G|3625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6FTG_003 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.1132
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FTG|1|u|G|2855
6FTG|1|u|C|2856
6FTG|1|u|A|2857
6FTG|1|u|A|2858
6FTG|1|u|G|2859
6FTG|1|u|C|2860
6FTG|1|u|C|2861
6FTG|1|u|G|2862
6FTG|1|u|G|2863
*
6FTG|1|u|U|2887
6FTG|1|u|G|2888
*
6FTG|1|u|U|3613
6FTG|1|u|G|3614
*
6FTG|1|u|C|3618
6FTG|1|u|G|3619
6FTG|1|u|G|3620
6FTG|1|u|A|3621
6FTG|1|u|C|3622
6FTG|1|u|C|3623
6FTG|1|u|A|3624
6FTG|1|u|G|3625
6FTG|1|u|G|3626
*
6FTG|1|u|C|3835
6FTG|1|u|A|3836
6FTG|1|u|C|3837

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain R
eL19
Chain V
uL14
Chain W
Ribosomal protein L24

Coloring options:


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