J5_6FTJ_005
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6FTJ|1|u|G|3922, 6FTJ|1|u|A|4376, 6FTJ|1|u|G|4377, 6FTJ|1|u|A|4378, 6FTJ|1|u|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FTJ_005 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3033
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FTJ|1|u|U|3920
6FTJ|1|u|U|3921
6FTJ|1|u|G|3922
6FTJ|1|u|A|3923
*
6FTJ|1|u|U|4188
6FTJ|1|u|U|4189
6FTJ|1|u|U|4190
6FTJ|1|u|G|4191
*
6FTJ|1|u|C|4204
6FTJ|1|u|A|4205
*
6FTJ|1|u|U|4227
6FTJ|1|u|G|4228
*
6FTJ|1|u|C|4375
6FTJ|1|u|A|4376
6FTJ|1|u|G|4377
6FTJ|1|u|A|4378
6FTJ|1|u|A|4379
6FTJ|1|u|A|4380
6FTJ|1|u|A|4381
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain Q
- uL14
- Chain T
- eL21
- Chain a
- uL15
- Chain o
- eL42
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