J5_6FXC_013

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUGGC*GCGUGAG*CUCUGUUA*UCAGAAAGCCAC*GUGGCAAG

Length

40 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|Ba|C|37
6FXC|1|Ba|U|38
6FXC|1|Ba|G|39
6FXC|1|Ba|G|40
6FXC|1|Ba|C|41
*
6FXC|1|Ba|G|410
6FXC|1|Ba|C|411
6FXC|1|Ba|G|412
6FXC|1|Ba|U|413
6FXC|1|Ba|G|414
6FXC|1|Ba|A|415
6FXC|1|Ba|G|416
*
6FXC|1|Ba|C|442
6FXC|1|Ba|U|443
6FXC|1|Ba|C|444
6FXC|1|Ba|U|445
6FXC|1|Ba|G|446
6FXC|1|Ba|U|447
6FXC|1|Ba|U|448
6FXC|1|Ba|A|449
*
6FXC|1|Ba|U|501
6FXC|1|Ba|C|502
6FXC|1|Ba|A|503
6FXC|1|Ba|G|504
6FXC|1|Ba|A|505
6FXC|1|Ba|A|506
6FXC|1|Ba|A|507
6FXC|1|Ba|G|508
6FXC|1|Ba|C|509
6FXC|1|Ba|C|510
6FXC|1|Ba|A|511
6FXC|1|Ba|C|512
*
6FXC|1|Ba|G|549
6FXC|1|Ba|U|550
6FXC|1|Ba|G|551
6FXC|1|Ba|G|552
6FXC|1|Ba|C|553
6FXC|1|Ba|A|554
6FXC|1|Ba|A|555
6FXC|1|Ba|G|556

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bd

30S ribosomal protein S4

Chain Bl

30S ribosomal protein S12