J5_6FXC_015

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

ACAUGCAAG*CGGACGGG*CAC*GAC*GGCAGCAGU

Length

32 nucleotides

Bulged bases

6FXC|1|Aa|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|Aa|A|54
6FXC|1|Aa|C|55
6FXC|1|Aa|A|56
6FXC|1|Aa|U|57
6FXC|1|Aa|G|58
6FXC|1|Aa|C|59
6FXC|1|Aa|A|60
6FXC|1|Aa|A|61
6FXC|1|Aa|G|62
*
6FXC|1|Aa|C|105
6FXC|1|Aa|G|106
6FXC|1|Aa|G|107
6FXC|1|Aa|A|108
6FXC|1|Aa|C|109
6FXC|1|Aa|G|110
6FXC|1|Aa|G|111
6FXC|1|Aa|G|112
*
6FXC|1|Aa|C|322
6FXC|1|Aa|A|323
6FXC|1|Aa|C|324
*
6FXC|1|Aa|G|345
6FXC|1|Aa|A|346
6FXC|1|Aa|C|347
*
6FXC|1|Aa|G|358
6FXC|1|Aa|G|359
6FXC|1|Aa|C|360
6FXC|1|Aa|A|361
6FXC|1|Aa|G|362
6FXC|1|Aa|C|363
6FXC|1|Aa|A|364
6FXC|1|Aa|G|365
6FXC|1|Aa|U|366

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L14

Chain AN

50S ribosomal protein L19

Chain Al

30S ribosomal protein S12

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20