J5_6FYX_003
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6FYX|1|2|U|56, 6FYX|1|2|A|93, 6FYX|1|2|C|423
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FYX_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0675
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FYX|1|2|C|54
6FYX|1|2|A|55
6FYX|1|2|U|56
6FYX|1|2|G|57
*
6FYX|1|2|C|90
6FYX|1|2|G|91
6FYX|1|2|A|92
6FYX|1|2|A|93
6FYX|1|2|U|94
6FYX|1|2|G|95
6FYX|1|2|G|96
6FYX|1|2|C|97
*
6FYX|1|2|G|385
6FYX|1|2|A|386
6FYX|1|2|G|387
*
6FYX|1|2|C|408
6FYX|1|2|A|409
6FYX|1|2|C|410
*
6FYX|1|2|G|421
6FYX|1|2|G|422
6FYX|1|2|C|423
6FYX|1|2|A|424
6FYX|1|2|G|425
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain J
- KLLA0E23673p
- Chain Y
- 40S ribosomal protein S24
Coloring options: