J5_6GB2_001
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAGAAAAAA*UACC*GUUG*CUAAU*AAGCAAUAAUG
- Length
- 34 nucleotides
- Bulged bases
- 6GB2|1|BA|A|205, 6GB2|1|BA|G|626, 6GB2|1|BA|U|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GB2|1|BA|C|201
6GB2|1|BA|C|202
6GB2|1|BA|A|203
6GB2|1|BA|G|204
6GB2|1|BA|A|205
6GB2|1|BA|A|206
6GB2|1|BA|A|207
6GB2|1|BA|A|208
6GB2|1|BA|A|209
6GB2|1|BA|A|210
*
6GB2|1|BA|U|236
6GB2|1|BA|A|237
6GB2|1|BA|C|238
6GB2|1|BA|C|239
*
6GB2|1|BA|G|356
6GB2|1|BA|U|357
6GB2|1|BA|U|358
6GB2|1|BA|G|359
*
6GB2|1|BA|C|605
6GB2|1|BA|U|606
6GB2|1|BA|A|607
6GB2|1|BA|A|608
6GB2|1|BA|U|609
*
6GB2|1|BA|A|624
6GB2|1|BA|A|625
6GB2|1|BA|G|626
6GB2|1|BA|C|627
6GB2|1|BA|A|628
6GB2|1|BA|A|629
6GB2|1|BA|U|630
6GB2|1|BA|A|631
6GB2|1|BA|A|632
6GB2|1|BA|U|633
6GB2|1|BA|G|634
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BP
- Mitochondrial ribosomal protein L15
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bh
- Mitochondrial ribosomal protein L44
- Chain Bl
- Mrpl34
- Chain Bn
- Mitochondrial ribosomal protein L51
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