J5_6GB2_002
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAAGACC*GGAUAACA*UCGAUGUU*AGUUCAG*CGGUUU
- Length
- 37 nucleotides
- Bulged bases
- 6GB2|1|BA|A|1057, 6GB2|1|BA|A|1271, 6GB2|1|BA|G|1328, 6GB2|1|BA|U|1329, 6GB2|1|BA|U|1432, 6GB2|1|BA|U|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GB2|1|BA|A|1052
6GB2|1|BA|G|1053
6GB2|1|BA|A|1054
6GB2|1|BA|A|1055
6GB2|1|BA|G|1056
6GB2|1|BA|A|1057
6GB2|1|BA|C|1058
6GB2|1|BA|C|1059
*
6GB2|1|BA|G|1269
6GB2|1|BA|G|1270
6GB2|1|BA|A|1271
6GB2|1|BA|U|1272
6GB2|1|BA|A|1273
6GB2|1|BA|A|1274
6GB2|1|BA|C|1275
6GB2|1|BA|A|1276
*
6GB2|1|BA|U|1323
6GB2|1|BA|C|1324
6GB2|1|BA|G|1325
6GB2|1|BA|A|1326
6GB2|1|BA|U|1327
6GB2|1|BA|G|1328
6GB2|1|BA|U|1329
6GB2|1|BA|U|1330
*
6GB2|1|BA|A|1405
6GB2|1|BA|G|1406
6GB2|1|BA|U|1407
6GB2|1|BA|U|1408
6GB2|1|BA|C|1409
6GB2|1|BA|A|1410
6GB2|1|BA|G|1411
*
6GB2|1|BA|C|1429
6GB2|1|BA|G|1430
6GB2|1|BA|G|1431
6GB2|1|BA|U|1432
6GB2|1|BA|U|1433
6GB2|1|BA|U|1434
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B5
- Mitochondrial ribosomal protein L32
- Chain BE
- ICT1
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BP
- Mitochondrial ribosomal protein L15
- Chain BQ
- Mitochondrial ribosomal protein L16
- Chain BW
- Mitochondrial ribosomal protein L22
- Chain Bi
- Mitochondrial ribosomal protein L45
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