J5_6GBZ_004

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6GBZ|1|A|U|1758, 6GBZ|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GBZ_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0732

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GBZ|1|A|G|1674
6GBZ|1|A|C|1675
6GBZ|1|A|A|1676
6GBZ|1|A|A|1677
6GBZ|1|A|A|1678
6GBZ|1|A|A|1679
6GBZ|1|A|U|1680
6GBZ|1|A|G|1681
6GBZ|1|A|G|1682
*
6GBZ|1|A|C|1706
6GBZ|1|A|G|1707
*
6GBZ|1|A|U|1751
6GBZ|1|A|C|1752
*
6GBZ|1|A|G|1756
6GBZ|1|A|A|1757
6GBZ|1|A|U|1758
6GBZ|1|A|A|1759
6GBZ|1|A|C|1760
6GBZ|1|A|C|1761
6GBZ|1|A|A|1762
6GBZ|1|A|G|1763
6GBZ|1|A|C|1764
*
6GBZ|1|A|G|1988
6GBZ|1|A|G|1989
6GBZ|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19