3D structure

PDB id
6GC0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 4
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGACUU*AGAC*GUUCU*AGC*GCGAAUG
Length
25 nucleotides
Bulged bases
6GC0|1|A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GC0|1|A|C|584
6GC0|1|A|G|585
6GC0|1|A|A|586
6GC0|1|A|C|587
6GC0|1|A|U|588
6GC0|1|A|U|589
*
6GC0|1|A|A|668
6GC0|1|A|G|669
6GC0|1|A|A|670
6GC0|1|A|C|671
*
6GC0|1|A|G|809
6GC0|1|A|U|810
6GC0|1|A|U|811
6GC0|1|A|C|812
6GC0|1|A|U|813
*
6GC0|1|A|A|1194
6GC0|1|A|G|1195
6GC0|1|A|C|1196
*
6GC0|1|A|G|1250
6GC0|1|A|C|1251
6GC0|1|A|G|1252
6GC0|1|A|A|1253
6GC0|1|A|A|1254
6GC0|1|A|U|1255
6GC0|1|A|G|1256

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:

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