J5_6GC4_004

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6GC4|1|A|U|1758, 6GC4|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GC4_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1188

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GC4|1|A|G|1674
6GC4|1|A|C|1675
6GC4|1|A|A|1676
6GC4|1|A|A|1677
6GC4|1|A|A|1678
6GC4|1|A|A|1679
6GC4|1|A|U|1680
6GC4|1|A|G|1681
6GC4|1|A|G|1682
*
6GC4|1|A|C|1706
6GC4|1|A|G|1707
*
6GC4|1|A|U|1751
6GC4|1|A|C|1752
*
6GC4|1|A|G|1756
6GC4|1|A|A|1757
6GC4|1|A|U|1758
6GC4|1|A|A|1759
6GC4|1|A|C|1760
6GC4|1|A|C|1761
6GC4|1|A|A|1762
6GC4|1|A|G|1763
6GC4|1|A|C|1764
*
6GC4|1|A|G|1988
6GC4|1|A|G|1989
6GC4|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19