J5_6GQ1_011
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6GQ1|1|2|U|56, 6GQ1|1|2|A|93, 6GQ1|1|2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GQ1_011 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0996
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GQ1|1|2|C|54
6GQ1|1|2|A|55
6GQ1|1|2|U|56
6GQ1|1|2|G|57
*
6GQ1|1|2|C|90
6GQ1|1|2|G|91
6GQ1|1|2|A|92
6GQ1|1|2|A|93
6GQ1|1|2|U|94
6GQ1|1|2|G|95
6GQ1|1|2|G|96
6GQ1|1|2|C|97
*
6GQ1|1|2|G|386
6GQ1|1|2|A|387
6GQ1|1|2|G|388
*
6GQ1|1|2|C|409
6GQ1|1|2|A|410
6GQ1|1|2|C|411
*
6GQ1|1|2|G|422
6GQ1|1|2|G|423
6GQ1|1|2|C|424
6GQ1|1|2|A|425
6GQ1|1|2|G|426
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 40S ribosomal protein S24-A
- Chain V
- 60S ribosomal protein L23-A
- Chain u
- 40S ribosomal protein S4-A
- Chain w
- 40S ribosomal protein S6-A
- Chain y
- 40S ribosomal protein S8-A
- Chain z
- 40S ribosomal protein S9-A
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