J5_6GQB_001
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6GQB|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GQB_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.1051
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|1|A|20
6GQB|1|1|G|21
6GQB|1|1|G|22
*
6GQB|1|4|C|35
6GQB|1|4|G|36
6GQB|1|4|A|37
6GQB|1|4|U|38
6GQB|1|4|G|39
6GQB|1|4|A|40
6GQB|1|4|A|41
6GQB|1|4|G|42
*
6GQB|1|4|U|102
6GQB|1|4|G|103
6GQB|1|4|A|104
6GQB|1|4|A|105
6GQB|1|4|C|106
6GQB|1|4|G|107
*
6GQB|1|4|C|115
6GQB|1|4|G|116
*
6GQB|1|4|C|137
6GQB|1|4|A|138
6GQB|1|4|U|139
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: