J5_6GQB_005
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6GQB|1|1|A|2404, 6GQB|1|1|A|2817, 6GQB|1|1|G|2874, 6GQB|1|1|U|2875, 6GQB|1|1|U|2954, 6GQB|1|1|U|2978, 6GQB|1|1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|1|A|2399
6GQB|1|1|G|2400
6GQB|1|1|A|2401
6GQB|1|1|A|2402
6GQB|1|1|G|2403
6GQB|1|1|A|2404
6GQB|1|1|C|2405
6GQB|1|1|C|2406
*
6GQB|1|1|G|2815
6GQB|1|1|G|2816
6GQB|1|1|A|2817
6GQB|1|1|U|2818
6GQB|1|1|A|2819
6GQB|1|1|A|2820
6GQB|1|1|C|2821
6GQB|1|1|U|2822
6GQB|1|1|G|2823
*
6GQB|1|1|C|2867
6GQB|1|1|U|2868
6GQB|1|1|U|2869
6GQB|1|1|C|2870
6GQB|1|1|G|2871
6GQB|1|1|A|2872
6GQB|1|1|U|2873
6GQB|1|1|G|2874
6GQB|1|1|U|2875
6GQB|1|1|C|2876
*
6GQB|1|1|G|2951
6GQB|1|1|G|2952
6GQB|1|1|U|2953
6GQB|1|1|U|2954
6GQB|1|1|U|2955
6GQB|1|1|A|2956
6GQB|1|1|G|2957
*
6GQB|1|1|U|2975
6GQB|1|1|A|2976
6GQB|1|1|G|2977
6GQB|1|1|U|2978
6GQB|1|1|U|2979
6GQB|1|1|U|2980
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain b
- 60S ribosomal protein L29
Coloring options: