J5_6GQB_007

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6GQB|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|C|31
6GQB|1|2|U|32
6GQB|1|2|U|33
6GQB|1|2|G|34
6GQB|1|2|U|35
*
6GQB|1|2|A|473
6GQB|1|2|A|474
6GQB|1|2|A|475
6GQB|1|2|U|476
6GQB|1|2|A|477
6GQB|1|2|A|478
6GQB|1|2|C|479
*
6GQB|1|2|G|509
6GQB|1|2|G|510
6GQB|1|2|A|511
6GQB|1|2|A|512
6GQB|1|2|U|513
6GQB|1|2|G|514
6GQB|1|2|A|515
6GQB|1|2|G|516
*
6GQB|1|2|C|536
6GQB|1|2|G|537
6GQB|1|2|A|538
6GQB|1|2|G|539
6GQB|1|2|G|540
6GQB|1|2|A|541
6GQB|1|2|A|542
6GQB|1|2|C|543
6GQB|1|2|A|544
6GQB|1|2|A|545
6GQB|1|2|U|546
*
6GQB|1|2|A|592
6GQB|1|2|U|593
6GQB|1|2|A|594
6GQB|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AU

40S ribosomal protein S30-A

Chain z

40S ribosomal protein S9-A