J5_6GQB_009

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6GQB|1|2|U|128, 6GQB|1|2|C|131, 6GQB|1|2|U|132, 6GQB|1|2|U|134, 6GQB|1|2|A|135, 6GQB|1|2|U|137, 6GQB|1|2|A|140, 6GQB|1|2|U|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|A|124
6GQB|1|2|U|125
6GQB|1|2|A|126
6GQB|1|2|G|127
6GQB|1|2|U|128
6GQB|1|2|U|129
6GQB|1|2|C|130
6GQB|1|2|C|131
6GQB|1|2|U|132
6GQB|1|2|U|133
6GQB|1|2|U|134
6GQB|1|2|A|135
6GQB|1|2|C|136
6GQB|1|2|U|137
6GQB|1|2|A|138
6GQB|1|2|C|139
6GQB|1|2|A|140
6GQB|1|2|U|141
6GQB|1|2|G|142
6GQB|1|2|G|143
*
6GQB|1|2|C|172
6GQB|1|2|A|173
6GQB|1|2|U|174
6GQB|1|2|G|175
6GQB|1|2|C|176
6GQB|1|2|U|177
6GQB|1|2|U|178
6GQB|1|2|A|179
6GQB|1|2|A|180
6GQB|1|2|A|181
6GQB|1|2|A|182
*
6GQB|1|2|U|203
6GQB|1|2|G|204
*
6GQB|1|2|C|263
6GQB|1|2|G|264
6GQB|1|2|A|265
6GQB|1|2|A|266
6GQB|1|2|U|267
*
6GQB|1|2|A|288
6GQB|1|2|U|289
6GQB|1|2|G|290
6GQB|1|2|G|291
6GQB|1|2|U|292
6GQB|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A

Chain y

40S ribosomal protein S8-A